Run quality control checks
EZQC.EZbakRFractions.Rd
Run quality control checks
Usage
# S3 method for class 'EZbakRFractions'
EZQC(obj, features = NULL, populations = NULL, fraction_design = NULL, ...)
Arguments
- obj
EZbakRFractions object, which is an EZbakRData object on which
EstimateFractions
has been run.- features
Set of features analyzed in the fractions table you are interested QCing. This gets passed to
EZget()
to help find this table.- populations
Set of mutation types analyzed in the fractions table you are interested in QCing. This gets passed to
EZget()
to help find this table.- fraction_design
The fraction "design matrix" specified to get the fractions table you are interested in QCing. This gets passed to
EZget()
to help find this table.- ...
Additional arguments. Currently goes unused.
Value
A list of ggplot2
objects visualizing the various aspects of your data
assessed by EZQC()
.