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Run quality control checks

Usage

# S3 method for class 'EZbakRFractions'
EZQC(obj, features = NULL, populations = NULL, fraction_design = NULL, ...)

Arguments

obj

EZbakRFractions object, which is an EZbakRData object on which EstimateFractions has been run.

features

Set of features analyzed in the fractions table you are interested QCing. This gets passed to EZget() to help find this table.

populations

Set of mutation types analyzed in the fractions table you are interested in QCing. This gets passed to EZget() to help find this table.

fraction_design

The fraction "design matrix" specified to get the fractions table you are interested in QCing. This gets passed to EZget() to help find this table.

...

Additional arguments. Currently goes unused.

Value

A list of ggplot2 objects visualizing the various aspects of your data assessed by EZQC().