Run quality control checks
EZQC.EZbakRFractions.RdRun quality control checks
Usage
# S3 method for class 'EZbakRFractions'
EZQC(obj, features = NULL, populations = NULL, fraction_design = NULL, ...)Arguments
- obj
EZbakRFractions object, which is an EZbakRData object on which
EstimateFractionshas been run.- features
Set of features analyzed in the fractions table you are interested QCing. This gets passed to
EZget()to help find this table.- populations
Set of mutation types analyzed in the fractions table you are interested in QCing. This gets passed to
EZget()to help find this table.- fraction_design
The fraction "design matrix" specified to get the fractions table you are interested in QCing. This gets passed to
EZget()to help find this table.- ...
Additional arguments. Currently goes unused.
Value
A list of ggplot2 objects visualizing the various aspects of your data
assessed by EZQC().