Example cB table — example

An example cB table used to create an EZbakRData object. This cB table is a subset of a cB file from the DCP2 KO dataset published in Luo et al., 2020. The original file is large (69 MB), so the example cB file has been downsampled and contains only a subset of reads from chromosome 21.

Usage

example_cB

Format

`example_cB`

A tibble with 10,000 rows and 7 columns:

sample: Sample name
rname: Chromosome name
GF: Gene name for reads aligning to any region of a gene
XF: Gene name for reads aligning to exclusively exonic regions of a gene
TC: Number of T-to-C mutations
nT: Number of Ts
n: Number of reads with same value for the first 6 columns

References

Luo et al. (2020) Biochemistry. 59(42), 4121-4142